SAMtools¶
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
https://www.htslib.org/
Available modules¶
The overview below shows which SAMtools installations are available per target architecture in EESSI, ordered based on software version (new to old).
To start using SAMtools, load one of these modules using a module load command like:
(This data was automatically generated on Fri, 06 Feb 2026 at 13:12:13 UTC)
| aarch64/generic | aarch64/a64fx | aarch64/neoverse_n1 | aarch64/neoverse_v1 | aarch64/nvidia/grace | x86_64/generic | x86_64/amd/zen2 | x86_64/amd/zen3 | x86_64/amd/zen4 | x86_64/intel/cascadelake | x86_64/intel/haswell | x86_64/intel/icelake | x86_64/intel/sapphirerapids | x86_64/intel/skylake_avx512 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SAMtools/1.18-GCC-12.3.0 | x | x | x | x | x | x | x | x | x | x | x | x | x | x |
| SAMtools/1.17-GCC-12.2.0 | x | x | x | x | x | x | x | x | x | x | x | x | x | x |