fastp¶
A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
https://github.com/OpenGene/fastp
Available modules¶
The overview below shows which fastp installations are available per target architecture in EESSI, ordered based on software version (new to old).
To start using fastp, load one of these modules using a module load command like:
(This data was automatically generated on Tue, 08 Apr 2025 at 01:48:33 UTC)
| aarch64/generic | aarch64/neoverse_n1 | aarch64/neoverse_v1 | x86_64/generic | x86_64/amd/zen2 | x86_64/amd/zen3 | x86_64/amd/zen4 | x86_64/intel/haswell | x86_64/intel/sapphirerapids | x86_64/intel/skylake_avx512 | |
|---|---|---|---|---|---|---|---|---|---|---|
| fastp/0.23.4-GCC-12.3.0 | x | x | x | x | x | x | x | x | x | x |
| fastp/0.23.4-GCC-12.2.0 | x | x | x | x | x | x | x | x | x | x |